pypers API

• pypers.pipeline
  • Configurator
    • Configurator.configure()
    • Configurator.first_differing_stage()
    • Configurator.pipeline
  • Pipeline
    • Pipeline.append()
    • Pipeline.configure()
    • Pipeline.fields
    • Pipeline.find()
    • Pipeline.get_extra_stages()
    • Pipeline.process()
    • Pipeline.stage()
  • ProcessingControl
    • ProcessingControl.step()
  • Stage
    • Stage.add_callback()
    • Stage.configure()
    • Stage.consumes
    • Stage.enabled_by_default
    • Stage.inputs
    • Stage.outputs
    • Stage.process()
    • Stage.remove_callback()
    • Stage.skip()
  • create_pipeline()
  • suggest_stage_id()
• pypers.config
  • Config
    • Config.copy()
    • Config.derive()
    • Config.dump_json()
    • Config.get()
    • Config.md5
    • Config.merge()
    • Config.pop()
    • Config.set_default()
    • Config.update()
• pypers.batch
  • BatchLoader
    • BatchLoader.load()
    • BatchLoader.task()
    • BatchLoader.task_list
  • JSONLoader
    • JSONLoader.dump()
    • JSONLoader.load()
    • JSONLoader.suffix_hint
  • StatusReport
    • StatusReport.get_task_status()
    • StatusReport.save()
    • StatusReport.update()
  • Task
    • Task.available_outputs
    • Task.cleanup()
    • Task.config_digest
    • Task.create_pipeline()
    • Task.find_best_pickup_candidate()
    • Task.find_parent_task_with_result()
    • Task.find_pickup_candidates()
    • Task.find_runnable_parent_task()
    • Task.get_marginal_fields()
    • Task.is_pending
    • Task.is_stage_marginal()
    • Task.outputs
    • Task.pickup_previous_task()
    • Task.reset()
    • Task.resolve_path()
    • Task.root_path
    • Task.run()
    • Task.write_results()
  • TaskLoader
    • TaskLoader.default_suffix
    • TaskLoader.dump()
    • TaskLoader.filepath()
    • TaskLoader.load()
    • TaskLoader.suffix_hint
    • TaskLoader.suffixes
  • YAMLLoader
    • YAMLLoader.dump()
    • YAMLLoader.load()
    • YAMLLoader.suffix_hint
  • resolve_pathpattern()
  • run_cli()
• pypers.output
  • ConsoleOutput
    • ConsoleOutput.derive()
    • ConsoleOutput.intermediate()
    • ConsoleOutput.write()
  • JupyterOutput
    • JupyterOutput.clear()
    • JupyterOutput.derive()
    • JupyterOutput.intermediate()
    • JupyterOutput.truncate()
    • JupyterOutput.write()
  • Output
    • Output.derive()
    • Output.intermediate()
    • Output.muted
    • Output.progress()
    • Output.write()
  • Text
    • Text.BLUE
    • Text.BOLD
    • Text.CYAN
    • Text.DARKCYAN
    • Text.END
    • Text.GREEN
    • Text.PURPLE
    • Text.RED
    • Text.UNDERLINE
    • Text.YELLOW
    • Text.style()
  • format_hms()
  • get_output()
  • is_jupyter_notebook()